annotate commons/core/sql/DbSQLite.py @ 12:5a054da77808

Updated CompareOverlappingSmallRef.xml
author m-zytnicki
date Thu, 14 Mar 2013 05:37:35 -0400
parents 769e306b7933
children
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6
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1 import sqlite3
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2 import os
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3 import sys
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4
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5 #TODO: update...compare with DbMySql.py
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6 class DbSQLite(object):
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7
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8 ## Constructor
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9 #
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10 # @param host string db file path
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11 # @param cfgFileName string configuration file name
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12 #
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13 # @note when a parameter is left blank, the constructor is able
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14 # to set attribute values from environment variable: REPET_HOST,
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15 #
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16 def __init__(self, host = ""):
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17 if host != "":
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18 self.host = host
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19 else:
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20 msg = "ERROR: no host specified"
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21 sys.stderr.write( "%s\n" % msg )
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22 sys.exit(1)
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23 # remove open() and cursor from init() use directly outside this class ...
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24 self.open()
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25 self.cursor = self.db.cursor()
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26
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27 ## Connect to the DbSQLite database
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28 #
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29 # @param verbose integer (default = 0)
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30 #
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31 def open( self, verbose = 0, nb = 0 ):
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32 try:
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33 #sqlite.connect(":memory:", check_same_thread = False)
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34 self.db = sqlite3.connect(self.host, check_same_thread= False, isolation_level=None, detect_types=sqlite3.PARSE_DECLTYPES)
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35 except sqlite3.Error, e:
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36 if verbose > 0:
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37 print "ERROR %s" % e
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38 sys.stdout.flush()
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39 return False
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40 return True
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41
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42 ## Execute a SQL query
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43 #
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44 # @param qry string SQL query to execute
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45 # @param params parameters of SQL query
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46 #
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47 def execute( self, qry, params=None ):
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48 try :
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49 if params == None:
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50 self.cursor.execute( qry )
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51 else:
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52 self.cursor.execute( qry, params )
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53 except Exception, e:
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54 #TODO Must be test
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55 try :
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56 if params == None:
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57 self.cursor.execute( qry )
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58 else:
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59 self.cursor.execute( qry, params )
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60 except Exception, e:
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61 print "Erreur : %s" % e
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62
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63 ## Retrieve the results of a SQL query
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64 #
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65 def fetchall(self):
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66 return self.cursor.fetchall()
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67
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68 ## Record a new table in the 'info_table' table
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69 #
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70 # @param tableName string table name
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71 # @param info string information on the table origin
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72 #
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73 def updateInfoTable( self, tableName, info ):
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74 if not self.doesTableExist( "info_tables" ):
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75 sqlCmd = "CREATE TABLE info_tables ( name varchar(255), file varchar(255) )"
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76 self.execute( sqlCmd )
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77 sqlCmd = 'INSERT INTO info_tables VALUES ("%s","%s")' % (tableName, info)
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78 self.execute( sqlCmd )
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79
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80 def createTable(self, tableName, dataType, overwrite=False, verbose=0):
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81 if verbose > 0:
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82 print "creating table '%s' from file '%s' of type '%s'..." % (tableName, dataType)
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83 sys.stdout.flush()
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84 if overwrite:
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85 self.dropTable(tableName)
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86 if dataType.lower() in ["job", "jobs"]:
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87 self.createJobTable(tableName)
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88 else:
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89 print "ERROR: unknown type %s" % (dataType)
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90 self.close()
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91 sys.exit(1)
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92 if verbose > 0:
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93 print "done!"; sys.stdout.flush()
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94
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95 ## Create a job table
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96 #
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97 # @param tablename new table name
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98 #
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99 def createJobTable( self, tablename ):
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100 sqlCmd = "CREATE TABLE %s" % ( tablename )
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101 sqlCmd += " ( jobid INT UNSIGNED"
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102 sqlCmd += ", jobname VARCHAR(255)"
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103 sqlCmd += ", groupid VARCHAR(255)"
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104 sqlCmd += ", command TEXT"
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105 sqlCmd += ", launcher VARCHAR(1024)"
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106 sqlCmd += ", queue VARCHAR(255)"
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107 sqlCmd += ", status VARCHAR(255)"
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108 sqlCmd += ", time timestamp"
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109 sqlCmd += ", node VARCHAR(255) )"
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110 self.execute( sqlCmd )
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111
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112 self.updateInfoTable( tablename, "job table" )
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113 sqlCmd = "CREATE INDEX igroupid ON " + tablename + " ( groupid )"
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114 self.execute( sqlCmd )
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115
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116 ## Test if a table exists
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117 #
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118 # @param table string table name
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119 # @return boolean True if the table exists, False otherwise
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120 #
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121 def doesTableExist( self, table ):
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122 qry = "PRAGMA table_info(%s)" % (table)
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123 self.execute( qry )
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124 results = self.cursor.fetchall()
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125 if results:
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126 return True
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127 return False
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128
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129 def isEmpty( self, tableName ):
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130 return self.getSize( tableName ) == 0
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131
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132 ## Give the rows number of the table
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133 #
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134 # @param tableName string table name
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135 #
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136 def getSize( self, tableName ):
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137 qry = "SELECT count(*) FROM %s;" % ( tableName )
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138 self.execute( qry )
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139 res = self.fetchall()
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140 return int( res[0][0] )
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141
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142 ## Remove a table if it exists
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143 #
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144 # @param table string table name
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145 # @param verbose integer (default = 0)
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146 #
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147 def dropTable( self, table, verbose = 0 ):
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148 if self.doesTableExist( table ):
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149 sqlCmd = "DROP TABLE %s" % ( table )
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150 self.execute( sqlCmd )
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151 sqlCmd = 'DELETE FROM info_tables WHERE name = "%s"' % ( table )
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152 self.execute( sqlCmd )
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153
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154 ## Get a list with the fields
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155 #
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156 def getFieldList( self, table ):
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157 lFields = []
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158 sqlCmd = "PRAGMA table_info(%s)" % ( table )
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159 self.execute( sqlCmd )
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160 lResults = self.fetchall()
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161 for res in lResults:
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162 lFields.append( res[1] )
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163 return lFields
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164
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165 ## delete this SQLite database session
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166 #
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167 def delete(self):
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168 os.remove(self.host)
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169
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170 ## Close the connection
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171 #
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172 def close( self ):
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173 self.db.close()