annotate SMART/galaxy/ConvertTranscriptFile_SamToGff3.xml @ 6:769e306b7933
Change the repository level.
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yufei-luo |
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Fri, 18 Jan 2013 04:54:14 -0500 (2013-01-18) |
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1 <tool id="ConvertTranscriptFile_SamToGff3" name="Sam -> Gff3">
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2 <description>Convert Sam File to Gff3 File.</description>
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3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g gff3 yes 2>$logFile </command>
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4 <inputs>
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5 <param name="inputFile" type="data" label="Input File" format="sam"/>
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6 </inputs>
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7
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8 <outputs>
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9 <data format="gff3" name="outputFile" label="[sam -> gff3] Output File"/>
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10 <data format="txt" name="logFile" label="[sam -> gff3] Log File"/>
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11 </outputs>
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12
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13 <help>
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14 </help>
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15 </tool>
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