6
+ − 1 <tool id="testDiffExpAnal" name="Differential Expression Analysis">
+ − 2 <description>Differential expression analysis for sequence count data</description>
+ − 3 <command interpreter="sh"> ../DiffExpAnal/testR.sh $inputFile $columnsOfGeneName $columnsOfCondition1 $columnsOfCondition2 $outputFileCSV $outputFilePNG 2>$outputLog </command>
+ − 4 <inputs>
+ − 5 <param name="inputFile" type="data" label="Input File" format="tabular"/>
+ − 6 <param name="columnsOfGeneName" type="text" value="0" label="Please indicate the column numbers of gene names with ',' separator. If There are not gene names, default value is 0."/>
+ − 7 <param name="columnsOfCondition1" type="text" value="1,2" label="Please indicate the column numbers of condition1 with ',' separator."/>
+ − 8 <param name="columnsOfCondition2" type="text" value="3,4" label="Please indicate the column numbers of condition2 with ',' separator."/>
+ − 9 </inputs>
+ − 10
+ − 11 <outputs>
+ − 12 <data format="tabular" name="outputFileCSV" label="[DiffExpAnal] Output CSV File"/>
+ − 13 <data format="png" name="outputFilePNG" label="[DiffExpAnal] Output PNG File"/>
+ − 14 <data format="tabular" name="outputLog" label="[DiffExpAnal] Log File"/>
+ − 15 </outputs>
+ − 16
+ − 17 <help>
+ − 18 </help>
+ − 19 </tool>