annotate commons/core/checker/AbstractChecker.py @ 64:783e6ed4eb66

Minor bug correction. Added casts to str in Galaxy XML files. Also closed the writer in the Python script "changeTagName."
author m-zytnicki
date Mon, 19 Oct 2015 14:16:44 +0200
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children
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1 # Copyright INRA (Institut National de la Recherche Agronomique)
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2 # http://www.inra.fr
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3 # http://urgi.versailles.inra.fr
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4 #
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5 # This software is governed by the CeCILL license under French law and
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6 # abiding by the rules of distribution of free software. You can use,
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7 # modify and/ or redistribute the software under the terms of the CeCILL
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8 # license as circulated by CEA, CNRS and INRIA at the following URL
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9 # "http://www.cecill.info".
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10 #
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11 # As a counterpart to the access to the source code and rights to copy,
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12 # modify and redistribute granted by the license, users are provided only
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13 # with a limited warranty and the software's author, the holder of the
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14 # economic rights, and the successive licensors have only limited
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15 # liability.
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16 #
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17 # In this respect, the user's attention is drawn to the risks associated
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18 # with loading, using, modifying and/or developing or reproducing the
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19 # software by the user in light of its specific status of free software,
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20 # that may mean that it is complicated to manipulate, and that also
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21 # therefore means that it is reserved for developers and experienced
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22 # professionals having in-depth computer knowledge. Users are therefore
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23 # encouraged to load and test the software's suitability as regards their
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24 # requirements in conditions enabling the security of their systems and/or
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25 # data to be ensured and, more generally, to use and operate it in the
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26 # same conditions as regards security.
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27 #
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28 # The fact that you are presently reading this means that you have had
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29 # knowledge of the CeCILL license and that you accept its terms.
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30
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32 from commons.core.checker.IChecker import IChecker
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33 from commons.core.LoggerFactory import LoggerFactory
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35
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36 ## Enable a Logger in your Checker.
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37 #
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38 # Subclasses of AbstractChecker have a already a logger enabled (referenced by self._log attribute). Subclasses also already implements IChecker.
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39 # All you have to do is to call __init__() method in your own constructor.
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40 class AbstractChecker( IChecker ):
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41
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42 ## Constructor
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43 #
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44 # @param logFileName name of log file where logger outputs
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45 #
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46 def __init__(self, logFileName):
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47 self._log = LoggerFactory.createLogger(logFileName)
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48
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49
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50 ## Set (change) default logger
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51 #
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52 # @param logger a new logger
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53 #
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54 def setLogger(self, logger):
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55 self._log = logger
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58 ## Return the logger instance
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59 #
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60 def getLogger(self):
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61 return self._log