annotate commons/core/checker/CheckerException.py @ 64:783e6ed4eb66

Minor bug correction. Added casts to str in Galaxy XML files. Also closed the writer in the Python script "changeTagName."
author m-zytnicki
date Mon, 19 Oct 2015 14:16:44 +0200
parents 769e306b7933
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 # Copyright INRA (Institut National de la Recherche Agronomique)
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 # http://www.inra.fr
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 # http://urgi.versailles.inra.fr
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 # This software is governed by the CeCILL license under French law and
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 # abiding by the rules of distribution of free software. You can use,
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7 # modify and/ or redistribute the software under the terms of the CeCILL
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 # license as circulated by CEA, CNRS and INRIA at the following URL
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 # "http://www.cecill.info".
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11 # As a counterpart to the access to the source code and rights to copy,
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12 # modify and redistribute granted by the license, users are provided only
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 # with a limited warranty and the software's author, the holder of the
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 # economic rights, and the successive licensors have only limited
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 # liability.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
16 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
17 # In this respect, the user's attention is drawn to the risks associated
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
18 # with loading, using, modifying and/or developing or reproducing the
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
19 # software by the user in light of its specific status of free software,
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
20 # that may mean that it is complicated to manipulate, and that also
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
21 # therefore means that it is reserved for developers and experienced
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
22 # professionals having in-depth computer knowledge. Users are therefore
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
23 # encouraged to load and test the software's suitability as regards their
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
24 # requirements in conditions enabling the security of their systems and/or
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
25 # data to be ensured and, more generally, to use and operate it in the
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
26 # same conditions as regards security.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
27 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
28 # The fact that you are presently reading this means that you have had
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
29 # knowledge of the CeCILL license and that you accept its terms.
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
30
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
31
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
32 ## Exception raised during check
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
33 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
34 # This class wraps Exception class
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
35 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
36 class CheckerException( Exception ):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
37
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
38 ## Constructor
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
39 #
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
40 # @param msg message embedded in Exception class
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
41 def __init__(self,msg=""):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
42 self.messages = []
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
43 self.msg = msg
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
44 Exception.__init__(self, msg)
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
45
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
46
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
47 def setMessages(self,lMessages):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
48 self.messages = lMessages
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
49
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
50
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
51 def getMessages(self):
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
52 return self.messages