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1 import unittest
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2 import os
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3 import subprocess
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4 from commons.core.utils.FileUtils import FileUtils
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5 from commons.launcher.LaunchMap import LaunchMap
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6
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7 class Test_F_LaunchMap(unittest.TestCase):
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8
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9 def setUp(self):
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10 self._fastaFileName = "LaunchMap_seqCluster1.fa"
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11 fastaFilePath = "%s/Tools/%s" % (os.environ["REPET_DATA"], self._fastaFileName)
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12 os.symlink(fastaFilePath, self._fastaFileName)
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13 self._obsFileName = "%s.fa_aln" % self._fastaFileName
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14
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15 def tearDown(self):
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16 os.remove(self._fastaFileName)
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17 try:
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18 os.remove(self._obsFileName)
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19 except: pass
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20
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21 def test_run_as_script(self):
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22 expFileName = "%s/Tools/expLaunchMap_seqCluster1.fa.fa_aln" % os.environ["REPET_DATA"]
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23 obsFileName = "obs.fa_aln"
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24 cmd = "LaunchMap.py "
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25 cmd += "-i %s " % self._fastaFileName
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26 cmd += "-o %s " % obsFileName
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27 cmd += "-c "
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28 process = subprocess.Popen(cmd, shell = True)
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29 process.communicate()
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30 self.assertTrue(FileUtils.are2FilesIdentical(expFileName, obsFileName))
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31 os.remove(obsFileName)
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32
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33 def test_run(self):
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34 expFileName = "%s/Tools/expLaunchMap_seqCluster1.fa.fa_aln" % os.environ["REPET_DATA"]
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35 iLaunchMap = LaunchMap(self._fastaFileName)
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36 iLaunchMap.setDoClean(True)
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37 iLaunchMap.run()
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38 self.assertTrue(FileUtils.are2FilesIdentical(expFileName, self._obsFileName))
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39
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40 if __name__ == "__main__":
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41 unittest.main() |
