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1 import unittest
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2 from commons.launcher.MapClusterLauncher import MapClusterLauncher
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3
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4
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5 class Test_MapClusterLauncher( unittest.TestCase ):
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6
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7
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8 def setUp( self ):
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9 self._i = MapClusterLauncher()
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10
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11
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12 def tearDown( self ):
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13 self._i = None
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14
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15
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16 def test_getSpecificHelpAsString( self ):
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17 exp = ""
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18 exp += "\nspecific options:"
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19 exp += "\n -s: size above which a gap is not penalized anymore (default='%i')" % ( self._i.getGapSize() )
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20 exp += "\n -m: penalty for a mismatch (default='%i')" % ( self._i.getMismatchPenalty() )
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21 exp += "\n -O: penalty for a gap openning (default='%i')" % ( self._i.getGapOpenPenalty() )
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22 exp += "\n -e: penalty for a gap extension (default='%i')" % ( self._i.getGapExtendPenalty() )
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23 obs = self._i.getSpecificHelpAsString()
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24 self.assertEqual( exp, obs )
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25
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26
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27 def test_setASpecificAttributeFromCmdLine( self ):
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28 self._i.setASpecificAttributeFromCmdLine( "-s", "42" )
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29 self.assertEqual( 42, self._i.getGapSize() )
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30
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31 self._i.setASpecificAttributeFromCmdLine( "-m", "-7" )
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32 self.assertEqual( -7, self._i.getMismatchPenalty() )
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33
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34 self._i.setASpecificAttributeFromCmdLine( "-O", "15" )
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35 self.assertEqual( 15, self._i.getGapOpenPenalty() )
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36
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37 self._i.setASpecificAttributeFromCmdLine( "-e", "5" )
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38 self.assertEqual( 5, self._i.getGapExtendPenalty() )
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39
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40 if __name__ == "__main__":
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41 unittest.main() |
