annotate SMART/galaxy/ConvertTranscriptFile_BedToSam.xml @ 10:c081f25e1572
Updated CompareOverlappingSmallRef.py
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m-zytnicki |
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Thu, 14 Mar 2013 05:25:40 -0400 |
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769e306b7933 |
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6
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1 <tool id="ConvertTranscriptFile_BedToSam" name="Bed -> Sam">
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2 <description>Convert Bed File to Sam File.</description>
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3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f bed -o $outputFile -g sam yes 2>$logFile </command>
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4 <inputs>
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5 <param name="inputFile" type="data" label="Input File" format="bed"/>
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6 </inputs>
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7
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8 <outputs>
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9 <data format="sam" name="outputFile" label="[bed -> sam] Output File"/>
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10 <data format="txt" name="logFile" label="[bed -> sam] Log File"/>
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11 </outputs>
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12
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13 <help>
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14 </help>
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15 </tool>
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