Mercurial > repos > yufei-luo > s_mart

annotate SMART/Java/Python/test/MockGetLetterDistribution.py @ 20:c265f13066d8

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author m-zytnicki
date Mon, 29 Apr 2013 03:24:43 -0400
parents 94ab73e8a190
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1 class MockGetLetterDistributionFasta (object) :
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2 def write(self,inFileName):
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3 f = open(inFileName,'w')
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4 f.write('>HWI-EAS337_3:7:1:415:1217/1\n')
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5 f.write('GATGTGCAGACTTTTCACGCAGGACTACATCACTGT\n')
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6 f.write('>HWI-EAS337_3:7:1:208:1489/1\n')
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7 f.write('GGAAACATATGCACATAAACGTTGAAATCATGCTTA\n')
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8 f.write('>HWI-EAS337_3:7:1:278:1153\n')
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9 f.write('GAGAAAACCTGTAATAAATACTGAGAGAAAGTAGGG\n')
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10 f.close()
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11
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12 class MockGetLetterDistributionFastq (object) :
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13 def write(self,inFileName):
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14 f = open(inFileName,'w')
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15 f.write('@HWI-EAS337_3:7:1:415:1217/1\n')
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16 f.write('GATGTGCAGACTTTTCACGCAGGACTACATCACTGT\n')
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17 f.write('+HWI-EAS337_3:7:1:415:1217/1\n')
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18 f.write('WWWVVVWPWWWVWWWWVVVVKVPWWVVWVWUUQUTQ\n')
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19 f.write('@HWI-EAS337_3:7:1:208:1489/1\n')
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20 f.write('GGAAACATATGCACATAAACGTTGAAATCATGCTTA\n')
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21 f.write('+HWI-EAS337_3:7:1:208:1489/1\n')
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22 f.write('WWWWWWWWWWWWWWWWWVWWVWWVWWWWWWUUUUUU\n')
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23 f.write('@HWI-EAS337_3:7:1:278:1153/1\n')
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24 f.write('GAGAAAACCTGTAATAAATACTGAGAGAAAGTAGGG\n')
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25 f.write('+HWI-EAS337_3:7:1:278:1153/1\n')
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26 f.write('WWWWWWWWWWWWWWWWWWWWWWVWVVVWWVUUUUUR\n')
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27 f.close()
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28
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29 class MockGetLetterDistributionExpectedCSV (object) :
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30 def write(self,inFileName):
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31 f = open(inFileName,'w')
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32 f.write('1;A=0%;C=0%;T=0%;G=0%;\n')
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33 f.write('2;A=0%;C=0%;T=0%;G=100.00%;\n')
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34 f.write('3;A=66.67%;C=0%;T=0%;G=33.33%;\n')
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35 f.write('4;A=33.33%;C=0%;T=33.33%;G=33.33%;\n')
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36 f.write('5;A=66.67%;C=0%;T=0%;G=33.33%;\n')
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37 f.write('6;A=66.67%;C=0%;T=33.33%;G=0%;\n')
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38 f.write('7;A=33.33%;C=33.33%;T=0%;G=33.33%;\n')
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39 f.write('8;A=66.67%;C=33.33%;T=0%;G=0%;\n')
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40 f.write('9;A=33.33%;C=33.33%;T=33.33%;G=0%;\n')
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41 f.write('10;A=33.33%;C=33.33%;T=0%;G=33.33%;\n')
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42 f.write('11;A=33.33%;C=0%;T=66.67%;G=0%;\n')
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43 f.write('12;A=0%;C=33.33%;T=0%;G=66.67%;\n')
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44 f.write('13;A=0%;C=33.33%;T=66.67%;G=0%;\n')
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45 f.write('14;A=66.67%;C=0%;T=33.33%;G=0%;\n')
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46 f.write('15;A=33.33%;C=33.33%;T=33.33%;G=0%;\n')
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47 f.write('16;A=33.33%;C=0%;T=66.67%;G=0%;\n')
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48 f.write('17;A=33.33%;C=33.33%;T=33.33%;G=0%;\n')
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49 f.write('18;A=100.00%;C=0%;T=0%;G=0%;\n')
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50 f.write('19;A=66.67%;C=33.33%;T=0%;G=0%;\n')
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51 f.write('20;A=33.33%;C=0%;T=33.33%;G=33.33%;\n')
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52 f.write('21;A=33.33%;C=66.67%;T=0%;G=0%;\n')
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53 f.write('22;A=33.33%;C=33.33%;T=0%;G=33.33%;\n')
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54 f.write('23;A=0%;C=0%;T=66.67%;G=33.33%;\n')
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55 f.write('24;A=0%;C=0%;T=33.33%;G=66.67%;\n')
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56 f.write('25;A=66.67%;C=0%;T=0%;G=33.33%;\n')
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57 f.write('26;A=33.33%;C=33.33%;T=0%;G=33.33%;\n')
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58 f.write('27;A=66.67%;C=0%;T=33.33%;G=0%;\n')
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59 f.write('28;A=66.67%;C=0%;T=0%;G=33.33%;\n')
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60 f.write('29;A=33.33%;C=33.33%;T=33.33%;G=0%;\n')
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61 f.write('30;A=66.67%;C=33.33%;T=0%;G=0%;\n')
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62 f.write('31;A=66.67%;C=0%;T=33.33%;G=0%;\n')
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63 f.write('32;A=0%;C=33.33%;T=33.33%;G=33.33%;\n')
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64 f.write('33;A=33.33%;C=0%;T=33.33%;G=33.33%;\n')
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65 f.write('34;A=33.33%;C=66.67%;T=0%;G=0%;\n')
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66 f.write('35;A=0%;C=0%;T=66.67%;G=33.33%;\n')
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67 f.write('36;A=0%;C=0%;T=33.33%;G=66.67%;\n')
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68 f.close()
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