Mercurial > repos > yufei-luo > s_mart

comparison SMART/DiffExpAnal/testR.sh @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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30:5677346472b5 31:0ab839023fe4
1 #! /bin/sh
2
3 #cat testR.R | R --slave --args $1 $2 $3 $4 $5 $6 < DiffExpAnal/testR.R
4
5 #ex1. sh testR.sh fly_RNA_counts.tsv 0 1,3 2,4 output_fly.csv output_fly.png
6 #ex2. sh testR.sh NeuralStemCellData.tab 1 2,3,4 5,6 output_modif.csv output_modif.png
7
8 #cat /share/apps/galaxy-dist/tools/repet_pipe/SMART/DiffExpAnal/testR.R | R --slave --args $1 $2 $3 $4 $5 $6 < /share/apps/galaxy-dist/tools/repet_pipe/SMART/DiffExpAnal/testR.R
9
10 #$1=targetFile(the list of files) $2=with or without replicate
11 cat /share/apps/galaxy-dist/tools/repet_pipe/SMART/DiffExpAnal/DESeqTools/anadiffGenes2conds.R| R --slave --args $1 $2 < /share/apps/galaxy-dist/tools/repet_pipe/SMART/DiffExpAnal/DESeqTools/anadiffGenes2conds.R