Mercurial > repos > yufei-luo > s_mart

comparison SMART/Java/Python/testInstall.py @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
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30:5677346472b5 31:0ab839023fe4
1 #! /usr/bin/env python
2 #
3 # Copyright INRA-URGI 2009-2010
4 #
5 # This software is governed by the CeCILL license under French law and
6 # abiding by the rules of distribution of free software. You can use,
7 # modify and/ or redistribute the software under the terms of the CeCILL
8 # license as circulated by CEA, CNRS and INRIA at the following URL
9 # "http://www.cecill.info".
10 #
11 # As a counterpart to the access to the source code and rights to copy,
12 # modify and redistribute granted by the license, users are provided only
13 # with a limited warranty and the software's author, the holder of the
14 # economic rights, and the successive licensors have only limited
15 # liability.
16 #
17 # In this respect, the user's attention is drawn to the risks associated
18 # with loading, using, modifying and/or developing or reproducing the
19 # software by the user in light of its specific status of free software,
20 # that may mean that it is complicated to manipulate, and that also
21 # therefore means that it is reserved for developers and experienced
22 # professionals having in-depth computer knowledge. Users are therefore
23 # encouraged to load and test the software's suitability as regards their
24 # requirements in conditions enabling the security of their systems and/or
25 # data to be ensured and, more generally, to use and operate it in the
26 # same conditions as regards security.
27 #
28 # The fact that you are presently reading this means that you have had
29 # knowledge of the CeCILL license and that you accept its terms.
30 #
31 """
32 Test if the configuration is sound
33 """
34
35 import sys
36 import os
37 import subprocess
38
39 # Test Python files
40 try :
41 from SMART.Java.Python.misc.RPlotter import *
42 except:
43 print "Cannot find Python scripts! Update PYTHONPATH (currently %s) environment variable and see configuration in the documentation!" % (os.environ["PYTHONPATH"] if "PYTHONPATH" in os.environ else "empty")
44 sys.exit(3)
45
46 try :
47 from SMART.Java.Python.mySql.MySqlTranscriptTable import *
48 from SMART.Java.Python.mySql.MySqlConnection import *
49 except:
50 print "SQLite is not installed ! Please read the documentation!"
51 sys.exit(4)
52
53
54 if __name__ == "__main__":
55
56 print "Python scripts are correctly read."
57
58 # Test mySQL
59 connection = MySqlConnection()
60 table = MySqlTranscriptTable(connection)
61
62 try:
63 table.createTranscriptTable()
64 except:
65 print "Cannot connect to the SQLite database! See configuration in the documentation!"
66 sys.exit(5)
67
68 print "SQLite database is correctly set up."
69
70
71 # Test R
72 fileName = "tmpFile.R"
73 file = open(fileName, "w")
74 file.write("?licence\n")
75 file.close()
76 rCommand = "R"
77 if "SMARTRPATH" in os.environ:
78 rCommand = os.environ["SMARTRPATH"]
79 command = "\"%s\" CMD BATCH %s" % (rCommand, fileName)
80 status = subprocess.call(command, shell=True)
81 os.remove(fileName)
82 outputFileName = "%sout" % (fileName)
83 if os.path.exists(outputFileName):
84 os.remove(outputFileName)
85
86 if status != 0:
87 print "Problem with the execution of R script (command '%s' did not work, current directory is %s, status is %d)! See configuration in the documentation!" % (command, os.getcwd(), status)
88 sys.exit(6)
89
90 line = {0: 1, 1: 2}
91 pngFileName = "tmpFile.png"
92 plotter = RPlotter(pngFileName)
93 plotter.addLine(line)
94 try:
95 plotter.plot()
96 except:
97 print "Problem with the execution of R script: library 'RColorBrewer' is missing! See configuration in the documentation!"
98 sys.exit(7)
99 os.remove(pngFileName)
100
101 print "R is available."
102
103 print "Set up is fine! Enjoy S-MART!"