Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/coverageGff.xml @ 31:0ab839023fe4
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| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 14:33:21 -0400 |
| parents | 94ab73e8a190 |
| children |
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| 30:5677346472b5 | 31:0ab839023fe4 |
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| 1 <tool id="coverageGff" name="coverage Gff"> | |
| 2 <description>Computes reads coverage form a "nbElements" tag and writes the calculated coverage in a gff3 out file.</description> | |
| 3 <command interpreter="perl"> coverageGff.pl -i $inputFile -l $readSize > $outputFile </command> | |
| 4 <inputs> | |
| 5 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
| 6 <param name="readSize" type="integer" value="38" help="The size of read, default: 38nt"/> | |
| 7 | |
| 8 </inputs> | |
| 9 | |
| 10 <outputs> | |
| 11 <data format="gff3" name="outputFile" label="[coveragePl] Output File"/> | |
| 12 </outputs> | |
| 13 | |
| 14 <help> | |
| 15 command example: perl coverageGff.pl -i *_trans_inIG.gff > *_trans_inIG_cov.gff | |
| 16 </help> | |
| 17 </tool> |