Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/prepareAnnot.sh @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
---|---|
date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
children |
comparison
equal
deleted
inserted
replaced
30:5677346472b5 | 31:0ab839023fe4 |
---|---|
1 #!/bin/bash | |
2 python $GALAXY_ROOT/tools/repet_pipe/SMART/Java/Python/clusterize.py -f gff -i $1 -o intermedia.gff3 -c -d 150 | |
3 awk '{if ($3!="exon") {print $0}}' intermedia.gff3 > intermedia.gff | |
4 #perl sortGff.pl -i intermedia.gff > $2 | |
5 python $GALAXY_ROOT/tools/repet_pipe/SMART/Java/Python/CollapseReads.py -i intermedia.gff -f gff -o $2 |