Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/writeResToHTML.xml @ 31:0ab839023fe4
Uploaded
| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 14:33:21 -0400 |
| parents | 94ab73e8a190 |
| children |
comparison
equal
deleted
inserted
replaced
| 30:5677346472b5 | 31:0ab839023fe4 |
|---|---|
| 1 <tool id="writeResToHTML" name="writeResToHTML"> | |
| 2 <description>Write all ncRNAs analysis results into an HTML file (Only for ncRNAs analysis pipeline).</description> | |
| 3 <command interpreter="python"> writeResToHTML.py | |
| 4 --input1Gff1 $input1GffFile1 --input1Gff2 $input1GffFile2 --input1PNG1 $input1PNGFile1 --input1PNG2 $input1PNGFile2 | |
| 5 --input2Gff1 $input2GffFile1 --input2Gff2 $input2GffFile2 --input2PNG1 $input2PNGFile1 --input2PNG2 $input2PNGFile2 | |
| 6 --input3Gff1 $input3GffFile1 --input3Gff2 $input3GffFile2 --input3PNG1 $input3PNGFile1 --input3PNG2 $input3PNGFile2 | |
| 7 --outHTML $outHTML | |
| 8 --outImgDir $outHTML.files_path | |
| 9 2> $log </command> | |
| 10 | |
| 11 <inputs> | |
| 12 <param name="input1GffFile1" type="data" label="First gff3 result in intergenic sRNAs analysis. (TRANS detection) " format="gff3"/> | |
| 13 <param name="input1GffFile2" type="data" label="Second gff3 result in intergenic sRNAs analyse. (TRANS detection) " format="gff3"/> | |
| 14 <param name="input1PNGFile1" type="data" label="PNG (getSize) result intergenic sRNAs analyse.(TRANS detection)" format="png"/> | |
| 15 <param name="input1PNGFile2" type="data" label="PNG (plot) result in intergenic sRNAs analyse. (TRANS detection) " format="png"/> | |
| 16 | |
| 17 <param name="input2GffFile1" type="data" label="First gff3 result in asRNAs analysis. (ANTISENSE detection) " format="gff3"/> | |
| 18 <param name="input2GffFile2" type="data" label="Second gff3 result in asRNAs analyse. (ANTISENSE detection) " format="gff3"/> | |
| 19 <param name="input2PNGFile1" type="data" label="PNG (getSize) result asRNAs analyse.(ANTISENSE detection)" format="png"/> | |
| 20 <param name="input2PNGFile2" type="data" label="PNG (plot) result in asRNAs analyse. (ANTISENSE detection) " format="png"/> | |
| 21 | |
| 22 <param name="input3GffFile1" type="data" label="First gff3 result in long 5'UTRs analysis. (CIS detection) " format="gff3"/> | |
| 23 <param name="input3GffFile2" type="data" label="Second gff3 result in long 5'UTRs analysis. (CIS detection) " format="gff3"/> | |
| 24 <param name="input3PNGFile1" type="data" label="PNG (getSize) result in long 5'UTRs analysis. (CIS detection) " format="png"/> | |
| 25 <param name="input3PNGFile2" type="data" label="PNG (plot) result in long 5'UTRs analysis. (CIS detection) " format="png"/> | |
| 26 | |
| 27 </inputs> | |
| 28 | |
| 29 <outputs> | |
| 30 <data format="HTML" name="outHTML" label="[writeRes2HTML] Output HTML File" help="This output file shows all results by ncRNAs detection analysis."/> | |
| 31 <data format="txt" name="log" label="[writeRes2HTML] Output log File"/> | |
| 32 </outputs> | |
| 33 | |
| 34 <help> | |
| 35 </help> | |
| 36 </tool> |