comparison SMART/galaxy/ConvertTranscriptFile_BlastToSam.xml @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 769e306b7933
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30:5677346472b5 31:0ab839023fe4
1 <tool id="ConvertTranscriptFile_BlastToSam" name="Blast (-m 8) -> Sam">
2 <description>Convert Blast (-m 8) File to Sam File.</description>
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g sam yes 2>$logFile </command>
4 <inputs>
5 <param name="inputFile" type="data" label="Input File" format="tabular"/>
6 </inputs>
7
8 <outputs>
9 <data format="sam" name="outputFile" label="[blast -> sam] Output File"/>
10 <data format="txt" name="logFile" label="[blast -> sam] Log File"/>
11 </outputs>
12
13 <help>
14 </help>
15 </tool>