Mercurial > repos > yufei-luo > s_mart

comparison commons/launcher/tests/Test_MapClusterLauncher.py @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
comparison
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30:5677346472b5 31:0ab839023fe4
1 import unittest
2 from commons.launcher.MapClusterLauncher import MapClusterLauncher
3
4
5 class Test_MapClusterLauncher( unittest.TestCase ):
6
7
8 def setUp( self ):
9 self._i = MapClusterLauncher()
10
11
12 def tearDown( self ):
13 self._i = None
14
15
16 def test_getSpecificHelpAsString( self ):
17 exp = ""
18 exp += "\nspecific options:"
19 exp += "\n -s: size above which a gap is not penalized anymore (default='%i')" % ( self._i.getGapSize() )
20 exp += "\n -m: penalty for a mismatch (default='%i')" % ( self._i.getMismatchPenalty() )
21 exp += "\n -O: penalty for a gap openning (default='%i')" % ( self._i.getGapOpenPenalty() )
22 exp += "\n -e: penalty for a gap extension (default='%i')" % ( self._i.getGapExtendPenalty() )
23 obs = self._i.getSpecificHelpAsString()
24 self.assertEqual( exp, obs )
25
26
27 def test_setASpecificAttributeFromCmdLine( self ):
28 self._i.setASpecificAttributeFromCmdLine( "-s", "42" )
29 self.assertEqual( 42, self._i.getGapSize() )
30
31 self._i.setASpecificAttributeFromCmdLine( "-m", "-7" )
32 self.assertEqual( -7, self._i.getMismatchPenalty() )
33
34 self._i.setASpecificAttributeFromCmdLine( "-O", "15" )
35 self.assertEqual( 15, self._i.getGapOpenPenalty() )
36
37 self._i.setASpecificAttributeFromCmdLine( "-e", "5" )
38 self.assertEqual( 5, self._i.getGapExtendPenalty() )
39
40 if __name__ == "__main__":
41 unittest.main()