Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/ConvertTranscriptFile_SamToCsv.xml @ 15:440ceca58672

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Uploaded
author m-zytnicki
date Mon, 22 Apr 2013 11:08:07 -0400
parents 769e306b7933
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14:c79b9ae3f65f 15:440ceca58672
1 <tool id="ConvertTranscriptFile_SamToCsv" name="Sam -> Csv">
2 <description>Convert Sam File to Csv File.</description>
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g csv yes 2>$logFile </command>
4 <inputs>
5 <param name="inputFile" type="data" label="Input File" format="sam"/>
6 </inputs>
7
8 <outputs>
9 <data format="csv" name="outputFile" label="[sam -> csv] Output File"/>
10 <data format="txt" name="logFile" label="[sam -> csv] Log File"/>
11 </outputs>
12
13 <help>
14 </help>
15 </tool>