Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/ConvertTranscriptFile_SamToGff2.xml @ 15:440ceca58672
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| author | m-zytnicki |
|---|---|
| date | Mon, 22 Apr 2013 11:08:07 -0400 |
| parents | 769e306b7933 |
| children |
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| 14:c79b9ae3f65f | 15:440ceca58672 |
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| 1 <tool id="ConvertTranscriptFile_SamToGff2" name="Sam -> Gff2"> | |
| 2 <description>Convert Sam File to Gff2 File.</description> | |
| 3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g gff2 yes 2>$logFile </command> | |
| 4 <inputs> | |
| 5 <param name="inputFile" type="data" label="Input File" format="sam"/> | |
| 6 </inputs> | |
| 7 | |
| 8 <outputs> | |
| 9 <data format="gff" name="outputFile" label="[sam -> gff2] Output File"/> | |
| 10 <data format="txt" name="logFile" label="[sam -> gff2] Log File"/> | |
| 11 </outputs> | |
| 12 | |
| 13 <help> | |
| 14 </help> | |
| 15 </tool> |