Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/changeGffFeatures.xml @ 36:44d5973c188c
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| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 15:02:29 -0400 |
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| 35:d94018ca4ada | 36:44d5973c188c |
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| 1 <tool id="changeGffFeatures" name="change gff Features"> | |
| 2 <description>Change a feature in a GFF file (the feature is the 3rd column).</description> | |
| 3 <command interpreter="bash"> | |
| 4 ../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
| 8 <param name="inputFeature" type="text" value="exon" label="The feature you want to change"/> | |
| 9 <param name="outputFeature" type="text" value="exon" label="The new feature"/> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 This script changes the third column of a GFF3 file (please refer to http://www.sequenceontology.org/gff3.shtml to know more about this format). | |
| 18 </help> | |
| 19 </tool> | |
| 20 |