Mercurial > repos > yufei-luo > s_mart
comparison SMART/Java/Python/ncList/NCIndex.py @ 6:769e306b7933
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| author | yufei-luo |
|---|---|
| date | Fri, 18 Jan 2013 04:54:14 -0500 |
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| 5:ea3082881bf8 | 6:769e306b7933 |
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| 1 #! /usr/bin/env python | |
| 2 # | |
| 3 # Copyright INRA-URGI 2009-2010 | |
| 4 # | |
| 5 # This software is governed by the CeCILL license under French law and | |
| 6 # abiding by the rules of distribution of free software. You can use, | |
| 7 # modify and/ or redistribute the software under the terms of the CeCILL | |
| 8 # license as circulated by CEA, CNRS and INRIA at the following URL | |
| 9 # "http://www.cecill.info". | |
| 10 # | |
| 11 # As a counterpart to the access to the source code and rights to copy, | |
| 12 # modify and redistribute granted by the license, users are provided only | |
| 13 # with a limited warranty and the software's author, the holder of the | |
| 14 # economic rights, and the successive licensors have only limited | |
| 15 # liability. | |
| 16 # | |
| 17 # In this respect, the user's attention is drawn to the risks associated | |
| 18 # with loading, using, modifying and/or developing or reproducing the | |
| 19 # software by the user in light of its specific status of free software, | |
| 20 # that may mean that it is complicated to manipulate, and that also | |
| 21 # therefore means that it is reserved for developers and experienced | |
| 22 # professionals having in-depth computer knowledge. Users are therefore | |
| 23 # encouraged to load and test the software's suitability as regards their | |
| 24 # requirements in conditions enabling the security of their systems and/or | |
| 25 # data to be ensured and, more generally, to use and operate it in the | |
| 26 # same conditions as regards security. | |
| 27 # | |
| 28 # The fact that you are presently reading this means that you have had | |
| 29 # knowledge of the CeCILL license and that you accept its terms. | |
| 30 # | |
| 31 | |
| 32 from SMART.Java.Python.structure.Transcript import Transcript | |
| 33 | |
| 34 class NCIndex(object): | |
| 35 | |
| 36 def __init__(self, verbosity): | |
| 37 self._verbosity = verbosity | |
| 38 self._step = 10000 | |
| 39 self._indices = [] | |
| 40 | |
| 41 def setStep(self, step): | |
| 42 self._step = step | |
| 43 | |
| 44 def addTranscript(self, end, index): | |
| 45 binStart = len(self._indices) | |
| 46 binEnd = int(end / self._step) | |
| 47 for bin in range(binStart, binEnd+1): | |
| 48 self._indices.append(index) | |
| 49 | |
| 50 def getIndex(self, transcript): | |
| 51 bin = int(transcript.getStart() / self._step) | |
| 52 if bin >= len(self._indices): | |
| 53 return self._indices[-1] | |
| 54 return self._indices[bin] | |
| 55 |