comparison SMART/Java/Python/ncList/NCIndex.py @ 6:769e306b7933

Change the repository level.
author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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5:ea3082881bf8 6:769e306b7933
1 #! /usr/bin/env python
2 #
3 # Copyright INRA-URGI 2009-2010
4 #
5 # This software is governed by the CeCILL license under French law and
6 # abiding by the rules of distribution of free software. You can use,
7 # modify and/ or redistribute the software under the terms of the CeCILL
8 # license as circulated by CEA, CNRS and INRIA at the following URL
9 # "http://www.cecill.info".
10 #
11 # As a counterpart to the access to the source code and rights to copy,
12 # modify and redistribute granted by the license, users are provided only
13 # with a limited warranty and the software's author, the holder of the
14 # economic rights, and the successive licensors have only limited
15 # liability.
16 #
17 # In this respect, the user's attention is drawn to the risks associated
18 # with loading, using, modifying and/or developing or reproducing the
19 # software by the user in light of its specific status of free software,
20 # that may mean that it is complicated to manipulate, and that also
21 # therefore means that it is reserved for developers and experienced
22 # professionals having in-depth computer knowledge. Users are therefore
23 # encouraged to load and test the software's suitability as regards their
24 # requirements in conditions enabling the security of their systems and/or
25 # data to be ensured and, more generally, to use and operate it in the
26 # same conditions as regards security.
27 #
28 # The fact that you are presently reading this means that you have had
29 # knowledge of the CeCILL license and that you accept its terms.
30 #
31
32 from SMART.Java.Python.structure.Transcript import Transcript
33
34 class NCIndex(object):
35
36 def __init__(self, verbosity):
37 self._verbosity = verbosity
38 self._step = 10000
39 self._indices = []
40
41 def setStep(self, step):
42 self._step = step
43
44 def addTranscript(self, end, index):
45 binStart = len(self._indices)
46 binEnd = int(end / self._step)
47 for bin in range(binStart, binEnd+1):
48 self._indices.append(index)
49
50 def getIndex(self, transcript):
51 bin = int(transcript.getStart() / self._step)
52 if bin >= len(self._indices):
53 return self._indices[-1]
54 return self._indices[bin]
55