Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/ConvertTranscriptFile_BedToSam.xml @ 6:769e306b7933
Change the repository level.
| author | yufei-luo |
|---|---|
| date | Fri, 18 Jan 2013 04:54:14 -0500 |
| parents | |
| children |
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| 5:ea3082881bf8 | 6:769e306b7933 |
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| 1 <tool id="ConvertTranscriptFile_BedToSam" name="Bed -> Sam"> | |
| 2 <description>Convert Bed File to Sam File.</description> | |
| 3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f bed -o $outputFile -g sam yes 2>$logFile </command> | |
| 4 <inputs> | |
| 5 <param name="inputFile" type="data" label="Input File" format="bed"/> | |
| 6 </inputs> | |
| 7 | |
| 8 <outputs> | |
| 9 <data format="sam" name="outputFile" label="[bed -> sam] Output File"/> | |
| 10 <data format="txt" name="logFile" label="[bed -> sam] Log File"/> | |
| 11 </outputs> | |
| 12 | |
| 13 <help> | |
| 14 </help> | |
| 15 </tool> |