Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/modifyFasta.xml @ 6:769e306b7933
Change the repository level.
| author | yufei-luo |
|---|---|
| date | Fri, 18 Jan 2013 04:54:14 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 5:ea3082881bf8 | 6:769e306b7933 |
|---|---|
| 1 <tool id="modifyFasta" name="modify fasta"> | |
| 2 <description>Extend or shring a list of sequences.</description> | |
| 3 <command interpreter="python"> ../Java/Python/modifyFasta.py -i $inputFile | |
| 4 #if $OptionStart.start == "Yes": | |
| 5 -s $OptionStart.startValue | |
| 6 #end if | |
| 7 | |
| 8 #if $OptionEnd.end == "Yes": | |
| 9 -e $OptionEnd.endValue | |
| 10 #end if | |
| 11 -o $outputFile | |
| 12 | |
| 13 </command> | |
| 14 | |
| 15 | |
| 16 <inputs> | |
| 17 <param name="inputFile" type="data" label="Input fasta File" format="fasta"/> | |
| 18 <conditional name="OptionStart"> | |
| 19 <param name="start" type="select" label="keep first nucleotides"> | |
| 20 <option value="Yes">Yes</option> | |
| 21 <option value="No" selected="true">No</option> | |
| 22 </param> | |
| 23 <when value="Yes"> | |
| 24 <param name="startValue" type="integer" value="0"/> | |
| 25 </when> | |
| 26 <when value="No"> | |
| 27 </when> | |
| 28 </conditional> | |
| 29 | |
| 30 <conditional name="OptionEnd"> | |
| 31 <param name="end" type="select" label="keep last nucleotides"> | |
| 32 <option value="Yes">Yes</option> | |
| 33 <option value="No" selected="true">No</option> | |
| 34 </param> | |
| 35 <when value="Yes"> | |
| 36 <param name="endValue" type="integer" value="0"/> | |
| 37 </when> | |
| 38 <when value="No"> | |
| 39 </when> | |
| 40 </conditional> | |
| 41 </inputs> | |
| 42 | |
| 43 <outputs> | |
| 44 <data format="fasta" name="outputFile" label="[modifyFasta] Output File"/> | |
| 45 </outputs> | |
| 46 | |
| 47 <help> | |
| 48 </help> | |
| 49 </tool> |