comparison SMART/galaxy/testR.xml @ 6:769e306b7933

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author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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5:ea3082881bf8 6:769e306b7933
1 <tool id="testDiffExpAnal" name="Differential Expression Analysis">
2 <description>Differential expression analysis for sequence count data (DESeq)</description>
3 <command interpreter="sh"> ../DiffExpAnal/testR.sh $inputFile $columnsOfGeneName $columnsOfCondition1 $columnsOfCondition2 $outputFileCSV $outputFilePNG 2>$outputLog </command>
4 <inputs>
5 <param name="inputFile" type="data" label="Input File" format="tabular"/>
6 <param name="columnsOfGeneName" type="text" value="0" label="Please indicate the column numbers of gene names with ',' separator. If There are not gene names, default value is 0."/>
7 <param name="columnsOfCondition1" type="text" value="1,2" label="Please indicate the column numbers of condition1 with ',' separator."/>
8 <param name="columnsOfCondition2" type="text" value="3,4" label="Please indicate the column numbers of condition2 with ',' separator."/>
9 </inputs>
10
11 <outputs>
12 <data format="tabular" name="outputFileCSV" label="[DiffExpAnal] Output CSV File"/>
13 <data format="png" name="outputFilePNG" label="[DiffExpAnal] Output PNG File"/>
14 <data format="tabular" name="outputLog" label="[DiffExpAnal] Log File"/>
15 </outputs>
16
17 <help>
18 </help>
19 </tool>