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comparison SMART/Java/Python/TestFiles/testC2S.fa @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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17:b0e8584489e6 18:94ab73e8a190
1 >chr1
2 CAACATTAGCGCCATGCCCACTGTGGGGAATTTACCAGCAGCCCGCACAC
3 TTAGCCGGCCTGCTGCAAAGCGGGATTTATTTAATTCATCCTCCAAGAGC
4 CCAAACGAGCATCCTATGAGTTTCTCGGAAGTGGTAGCTGGAGCAGGTCC
5 AGTTTCTATGGCACCCCCTAATCCGGCACCACTGACGAAAACCCCAGGAA
6 AGCGGACAAACGACGATCTGGATTGCTCAAATTTTAAGACGCCCAATAAA
7 AAATTATGCGCGACATCCAATTTTGTAACTCCCTGCATTTTTCCCCCGCT
8 CATCACACCAGTTTTCAAAAGCAAGGCAGCTCAATCTGTTTATGAGGAAT
9 CAAAAGCCAGAAACGGACCCACCCGCCAGCCGTTACCCTGTAGCATCAAT
10 GTCTCTGCTTGCAGCGCAGCGGCGCCACCCGTTATCGCCCCCCTACCCCC
11 TCAAAATACAGATGCACAGCTGCCTCCATGGAAAATCGTGCCCCAGAGCC
12 GTAGAGCACCCCCTATACTCGTCAATGATGTGAAGGAAATTGTCCCTCTC
13 CTGGAAAAGCTAAATTATACAGCAGGAGTATCCAGCTACACCACCAGAGC
14 AATAGAAGGAAACGGGGTCAGGATCCAGGCCAAGGATATGACCGCCTACA
15 ACAAAATTAAAGAAGTCCTGGTGGCCAACGGATTTCCTTTATTCACCAAC
16 CAGCCCAAGTCTGAGAGAGGCTTCCGAGTCATCATCAGACACCTCCATCA
17 TTCCACACCATGCTCGTGGATAGTCGAGGAGCTGCTGAAGCTCGGTCTCC
18 AAGCGCGCTTCGTCAGAAACATGACGAATCCAGCTACAGGTGGCCCCATG
19 CGAATGTTTGAAGTGGAGATCGTCATGGCCAAAGATGGCAGCCACGATAA
20 AATTCTCTCACTCAAACAAATCGGTGGGCAAAAGGTGGATATTGAAAGGA
21 AAAATAGGACACAGGAGCCGGTTCAGTGCTACAGATGCCAGGGCTTCAGA
22 CATGCCAAAAATTCATGCATGAGGACGCCTAAATGCATGAAATGCGCTGG
23 CGATCACCTGTCATCCTGCTGCACCAAGCCAAAATCCACCCCCGCCACCT
24 GCATCAACTGCTCTGGGGAACATATCAGCGCTTATAAAGGATGCCCCGCC
25 TACAAGGCCGAAAAACGAAAGCTGGCGGCTAACATTATTGACACAAACAA
26 AATAAGGACAATCAAAGACGCAACTAATCACTTTTATAAACGACAAGGCC
27 CCCCTCCACGTAATAATACCCCTCGACTACCGCACAGCTCAGCAATCCTG
28 ACCAAGTCAATCGCTGAAGCTCGCCAGGAAGCCGCCAAAAAGTCGATGCT
29 AAATCCTTATTGGCAAAGCTCGAACGACAGAAGGCCACGTTTCTCCTCCC
30 ATGACACTGCCATTCAAAAACGGCTAAACAAATGGCGCCGAAACTCTAAT
31 AAGATACCCAAAAAGGGTAGGATATCCTCAAAGGACAATGCAAAGCCAAG
32 ACCGGCATCCAAGACAAGCAACCCAGCGCAAAGACATCTGGAAAAATACC
33 AGGACATGCTCCGAAACGAAAGGAGTGAAGAAATTGACCATGAACCTGAA
34 AAAGGTACTCCTAATCCCAGCCGAGTCGGCAACGACAGCCCTCCGACCAC
35 CAGCAGAGCCGCCAGAGCTAACTTTAAGCCAAGAATTATCGATGAAGCTA
36 CGCCATCGCCAAGAAACTCCAATCCTTACCTACAGAAGAGCTTCTCGGAC
37 GACCCCACCATTAATCTAGCTAATAGAGTCGATAATTTAGAAAAGAAAAT
38 TGACATTTTAATGGCTTTAATCATACAAGGAACCAATAACAATAATCTTG
39 ACATTGATACATCAATCTAAATTTACATTACACTTATTTATATTTATACC
40 TATTATAAATATATATATCCGACACAAAAGCGCACGTCTGCCCACCCTTA
41 TAATGTTCTAATTATTATCACCTTCCTCGACGCAAAGCTTAAACCTCTGT
42 TGAAAAACAAATCAATTAGATGGATGACATAAAAACGTAAATAAATAATC
43 TTCTCACCTCAAGCATCCGGATAAAAAAGGCAATACGCACTCCAACTCCT
44 GATGAAGCTATGTGAAGAAAACTACACCAGGATTCAAAAGTCGAATCGGA
45 GGATGGACATGAGAAGAATCTGTGCGGCAGAAGCATGATGAATAGAGGCG
46 ACTCGCTGCAGCAAAATATGCACTACGCCACTTACCTGAATCTTCTGCGG
47 CGCAGTCTTTTTATGTACCATCATCTCCGCCGCAACCGCTTCACACAGCT
48 CCACAACATAAGATGCGCCACCAAAGCTGCCTCCGTACTGAACTGGACAT
49 CATGCGTTGCGCTGCAAATCCTATCCTATTGACGAGCGCCAACAGCGGGT
50 CTGCGCTAAAAACCTAAAAACAAAACAAAACAAAACAATTAATCAACAAC
51 AAATTGAACATAACAATCAAACAATAACAATCACTTACCTCCTTGACTGC
52 ATCCAATCGCTGACCCAAATCCAACACAACCGACAACAGGAGACGGGCTT
53 CGCAAATGCAAAACAAAATCGCCAACTTTTGCGATTATAAATACAAAAAA
54 TTGACAATTTTCTGATGCCATCTCCATCCTTTGATCCCACTGCCCAAATA
55 AGGATCATTAGCGCGGAGCTGAAGCCACATTAATAAGCTGTAAAATTGAT
56 CCCCAAAATGTATATTTCTCCTCAATACCGTATCTTCAACGAACTTTCCG
57 CCAACCTGCAATGAAAGGGAAATTAATAATAATGCTATACAGAATTAATC
58 AGCGACACATAGAAAATAGCAAACCAGACAGGCAAAGTAGTAGATGCAAA
59 CAGGCGACTCCATCCCGCCGACGACAAGCATTCAAATCCTTCATACTGAA
60 ACAAGGAAGCACAAGCCAATACTGGGAATTATTTACTCAAACAAAATACT
61 TATCTAATTACCAACTCGACGACTCCAAATACGCGGCACACCGGCTGCGA
62 TAGCTCTTAAATAAAGGGCCTCCTAATTAACTACAAAACGTACCTGAAAA
63 ATAAAACAATTAACGCAATCGTAAATAATTACAATTATAATACTCACCTC
64 CAGATTAGCCTAATGTACCTGAAAAACAAAAACAAAAATTAATGCAATAA
65 TTATAAAAACAAATAAATACAAACACAATACTTACCTCCAAATTACCTCC
66 CAGCCAAAGCACCTGAAATACAAAAACAAAGAATTAATGCAATAAATAAA
67 TCAAATAAATACAAATACAATACTCACCCCAAATAACCTCCCAGCTAATT
68 TACCTGAAAAAACAAAAATTAATACAATATTAAAAACGAATAACAAATGT
69 AATACTTACCAAATTTTAACTTTGTATTCATTTCCATGGCCCAAATCGTT
70 GCGACGGTCCTCGGCAACAAATCATGTTCCGGCGGCTCCTAGCTGCCAAT
71 CCCGACGCATTGGCCACAAGACGCGGCGCTCCTGGCAACTCTCGATGAAT
72 AACCGAGCTCCAATTTCCACGACGACTCTTCTGCCAAACGAGTCAGATTA
73 CACCAACATAATGCCAGCAGCTCCCAAACAATGCAATGACGGCTGCGCGG
74 GATCCATCTTCAGATTTTCTTCTTCCTGACGACCGGCTAAGCTGCCCTGC
75 AATTTAAGAAATTTTATTAAACAATTGCAAATATCTACCACTGAGGGTGG
76 TAGAGACAACCACCAAATGACAGCGGCGCGGGATACACCCACCACGAATA
77 GGCTTTCTGCAGCGCTGGCCGGACATGCATGTTGCGACGCGCATTCAGCG
78 TCCACAACAAGCCCCAGCCAGAATACAACAAACACTCACCTGCAATGTTT
79 CCTGAGGCTTCCAGCGACTCGGTGCTTCCGTCCTTCTGGCGGGGGTACCT
80 GAAAAGAATTAATTCAAATTATGTTAGTCTTAAATTCCAATGTTTCTTGT
81 TAAATAATTCAAATTATCAAATGTAAACATAACATACAATGTGATAATGT
82 TACCAGTCCATGTTACTGCCAAAAACCTAAGTTTACAAAAAAATACTTAC
83 CTCTTAATATTAATACTAAATCTATGTCCAATCCCCAAACTCACCCCACG
84 TAATGTACACCTCAAAAATTCAAATAATTGTACCTACATATTGCATTCTA
85 TGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTCATTCTGT
86 CTCCGTACCTCCACCAGCAAAGTTAAAAATGAAATATCCCTCATCACCGC
87 TGCAATCTACATACATGGATACAGCGCAAAAGACGGTCAACCACGTCGTC
88 TCCGAGTCGTTCAGGACACCTTGCTGCTCTCAATAACCTCCAGCCTGACG
89 AGCGCCAACAGCGAGTTGACGCTAAAACCTAAAAACAAACAACAACAAAT
90 TAAATACAAACAAATAAAATAAAATCAAACAAAACACTTACTTCACTGAC
91 AACAGCCAATTGCTGATCCACATTCAACGCAACAGACAACAGGAGACGGG
92 CCCCGCAAACGCAAAACAAAATCGCCAATTTTTGCGATTTTAAATACAAA
93 AAATCGACAATTTTACTAAGCCCTCTCCATCTCCTGATGCCACCGCCACA
94 ATAAGGATCACTAGCGCGGCGCTGATGCCACATCAATAAACCGCAATATT
95 TGTCCTCAAAACGTATACTTCTTCTCAGTATCGCAACTTCTACGAATTTC
96 CCGCTAACCTACAATGAAAGGAAAATCAATAAGAATGTGATACAAAAAAT
97 TAATCAAGGGCAAATAGAAAATAGCTTACCGGACAGGCATACTAGCAGAT
98 GCTAATATGCAACTCCATCCTTCTGAGACAAATACGCAACTCCTTTTTTC
99 CAAGATTGCAAATACTGAAACAAGGAAGCACAAGCCAATACTGGGAATTA
100 TTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATC