Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/CollapseReads.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="collapseReads" name="collapse reads"> 1 <tool id="collapseReads" name="collapse reads">
2 <description>Merges two genomic features if they have exactly the same genomic coordinates.</description> 2 <description>Merges two genomic features if they have exactly the same genomic coordinates.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 ../Java/Python/CollapseReads.py -i $formatType.inputFileName 7 ../Java/Python/CollapseReads.py -i $formatType.inputFileName
5 #if $formatType.FormatInputFileName == 'bed': 8 #if $formatType.FormatInputFileName == 'bed':
6 -f bed 9 -f bed
7 #elif $formatType.FormatInputFileName == 'gff': 10 #elif $formatType.FormatInputFileName == 'gff':