Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/ConvertTranscriptFile.xml @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
parents | 440ceca58672 |
children | 0ab839023fe4 |
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17:b0e8584489e6 | 18:94ab73e8a190 |
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1 <tool id="ConvertTranscriptFile" name="convert transcript file"> | 1 <tool id="ConvertTranscriptFile" name="convert transcript file"> |
2 <description>Convert a file from a format to another.</description> | 2 <description>Convert a file from a format to another.</description> |
3 <requirements> | |
4 <requirement type="set_environment">PYTHONPATH</requirement> | |
5 </requirements> | |
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFormatType.inputFileName | 6 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFormatType.inputFileName |
4 #if $inputFormatType.FormatInputFileName == 'gff3': | 7 #if $inputFormatType.FormatInputFileName == 'gff3': |
5 -f gff3 | 8 -f gff3 |
6 #elif $inputFormatType.FormatInputFileName == 'bed': | 9 #elif $inputFormatType.FormatInputFileName == 'bed': |
7 -f bed | 10 -f bed |