Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/CountReadGCPercent.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
comparison
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="CountReadGCPercent" name="count read GCpercent"> 1 <tool id="CountReadGCPercent" name="count read GC percent">
2 <description>Count GC percent for each read against a genome.</description> 2 <description>Count GC percent for each read against a genome.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command> 6 <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
4 <inputs> 7 <inputs>
5 <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/> 8 <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
6 <param name="inputGffFile" type="data" label="Input File" format="gff3"/> 9 <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
7 </inputs> 10 </inputs>
8 11
9 <outputs> 12 <outputs>
10 <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/> 13 <data format="gff3" name="outputFile" label="[count read GC percent] Output File"/>
11 </outputs> 14 </outputs>
12 15
13 <help> 16 <help>
14 Count the GC% of a FASTA file. 17 Count the GC% of a FASTA file.
15 </help> 18 </help>