Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/coordinatesToSequence.xml @ 18:94ab73e8a190

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
comparison
equal deleted inserted replaced
17:b0e8584489e6 18:94ab73e8a190
1 <tool id="coordinatesToSequence" name="coordinates to sequence"> 1 <tool id="coordinatesToSequence" name="coordinates to sequence">
2 <description>Coordinates to Sequences: Extract the sequences from a list of coordinates.</description> 2 <description>Coordinates to Sequences: Extract the sequences from a list of coordinates.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 ../Java/Python/coordinatesToSequence.py -i $formatType.inputFileName1 7 ../Java/Python/coordinatesToSequence.py -i $formatType.inputFileName1
5 #if $formatType.FormatInputFileName1 == 'bed': 8 #if $formatType.FormatInputFileName1 == 'bed':
6 -f bed 9 -f bed
7 #elif $formatType.FormatInputFileName1 == 'gff': 10 #elif $formatType.FormatInputFileName1 == 'gff':