Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/getReadDistribution.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 769e306b7933
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="getReadDistribution" name="get read distribution"> 1 <tool id="getReadDistribution" name="get read distribution">
2 <description>Get Read Distribution v1.0.1: Plot the number of identical reads and give the most represented.</description> 2 <description>Get Read Distribution v1.0.1: Plot the number of identical reads and give the most represented.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 ../Java/Python/WrappGetReadDistribution.py -i $formatType.inputFileName 7 ../Java/Python/WrappGetReadDistribution.py -i $formatType.inputFileName
5 #if $formatType.FormatInputFileName == 'fasta': 8 #if $formatType.FormatInputFileName == 'fasta':
6 -f fasta 9 -f fasta
7 #elif $formatType.FormatInputFileName == 'fastq': 10 #elif $formatType.FormatInputFileName == 'fastq':
56 </conditional> 59 </conditional>
57 60
58 </inputs> 61 </inputs>
59 62
60 <outputs> 63 <outputs>
61 <data name="outputFile" format="tar" label="[getReadDistribution] tar out file" help="You can not see the results directly from galaxy, but you can download this tar output file."/> 64 <data name="outputFile" format="tar" label="[get read distribution] tar out file" help="You can not see the results directly from galaxy, but you can download this tar output file."/>
62 </outputs> 65 </outputs>
63 66
64 <help> 67 <help>
65 This script gives a .tar out file, if you want to take look at the results, you have to download it. 68 This script gives a .tar out file, if you want to take look at the results, you have to download it.
66 </help> 69 </help>