Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/getSizes.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="GetSizes" name="get sizes"> 1 <tool id="GetSizes" name="get sizes">
2 <description>Get the sizes of a set of genomic coordinates.</description> 2 <description>Get the sizes of a set of genomic coordinates.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 ../Java/Python/getSizes.py -i $formatType.inputFileName $formatType.FormatInputFileName 7 ../Java/Python/getSizes.py -i $formatType.inputFileName $formatType.FormatInputFileName
5 8
6 #if $OptionQuery.OptionQ == 'NONE': 9 #if $OptionQuery.OptionQ == 'NONE':
7 -q size 10 -q size
120 123
121 <param name="barPlot" type="boolean" truevalue="-B" falsevalue="" checked="false" label="use barplot representation"/> 124 <param name="barPlot" type="boolean" truevalue="-B" falsevalue="" checked="false" label="use barplot representation"/>
122 </inputs> 125 </inputs>
123 126
124 <outputs> 127 <outputs>
125 <data name="outputFile" format="png" label="[Get sizes] output file"/> 128 <data name="outputFile" format="png" label="[get sizes] output file"/>
126 </outputs> 129 </outputs>
127 130
128 <help> 131 <help>
129 Get the sequence/annotation size distribution. A point (*x*, *y*) means that *y* elements have a size of *x* nucleotides. 132 Get the sequence/annotation size distribution. A point (*x*, *y*) means that *y* elements have a size of *x* nucleotides.
130 133