Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/getSizes.xml @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
parents | 440ceca58672 |
children | 0ab839023fe4 |
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17:b0e8584489e6 | 18:94ab73e8a190 |
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1 <tool id="GetSizes" name="get sizes"> | 1 <tool id="GetSizes" name="get sizes"> |
2 <description>Get the sizes of a set of genomic coordinates.</description> | 2 <description>Get the sizes of a set of genomic coordinates.</description> |
3 <requirements> | |
4 <requirement type="set_environment">PYTHONPATH</requirement> | |
5 </requirements> | |
3 <command interpreter="python"> | 6 <command interpreter="python"> |
4 ../Java/Python/getSizes.py -i $formatType.inputFileName $formatType.FormatInputFileName | 7 ../Java/Python/getSizes.py -i $formatType.inputFileName $formatType.FormatInputFileName |
5 | 8 |
6 #if $OptionQuery.OptionQ == 'NONE': | 9 #if $OptionQuery.OptionQ == 'NONE': |
7 -q size | 10 -q size |
120 | 123 |
121 <param name="barPlot" type="boolean" truevalue="-B" falsevalue="" checked="false" label="use barplot representation"/> | 124 <param name="barPlot" type="boolean" truevalue="-B" falsevalue="" checked="false" label="use barplot representation"/> |
122 </inputs> | 125 </inputs> |
123 | 126 |
124 <outputs> | 127 <outputs> |
125 <data name="outputFile" format="png" label="[Get sizes] output file"/> | 128 <data name="outputFile" format="png" label="[get sizes] output file"/> |
126 </outputs> | 129 </outputs> |
127 | 130 |
128 <help> | 131 <help> |
129 Get the sequence/annotation size distribution. A point (*x*, *y*) means that *y* elements have a size of *x* nucleotides. | 132 Get the sequence/annotation size distribution. A point (*x*, *y*) means that *y* elements have a size of *x* nucleotides. |
130 | 133 |