Mercurial > repos > yufei-luo > s_mart

comparison SMART/galaxy/getWigProfile.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="getWigProfile" name="get wig profile"> 1 <tool id="getWigProfile" name="get WIG profile">
2 <description>Compute the average profile of some genomic coordinates using WIG files (thus covering a large proportion of the genome).</description> 2 <description>Compute the average profile of some genomic coordinates using WIG files (thus covering a large proportion of the genome).</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 ../Java/Python/getWigProfile.py -i $formatType.inputFileName 7 ../Java/Python/getWigProfile.py -i $formatType.inputFileName
5 #if $formatType.FormatInputFileName == 'bed': 8 #if $formatType.FormatInputFileName == 'bed':
6 -f bed 9 -f bed
7 #elif $formatType.FormatInputFileName == 'gff': 10 #elif $formatType.FormatInputFileName == 'gff':
62 </conditional> 65 </conditional>
63 66
64 </inputs> 67 </inputs>
65 68
66 <outputs> 69 <outputs>
67 <data name="outputFilePNG" format="png" label="[getWigProfile] out file"/> 70 <data name="outputFilePNG" format="png" label="[get WIG profile] output file"/>
68 </outputs> 71 </outputs>
69 72
70 <help> 73 <help>
71 Computes the average distribution of the WIG data (please consult http://genome.ucsc.edu/goldenPath/help/wiggle.html to know more about this format) along the transcripts given in input, and possibly before and after the transcripts. 74 Computes the average distribution of the WIG data (please consult http://genome.ucsc.edu/goldenPath/help/wiggle.html to know more about this format) along the transcripts given in input, and possibly before and after the transcripts.
72 75