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comparison SMART/galaxy/restrictFromSize.xml @ 18:94ab73e8a190

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Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents 440ceca58672
children 0ab839023fe4
comparison
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17:b0e8584489e6 18:94ab73e8a190
1 <tool id="restrictFromSize" name="restrict from size"> 1 <tool id="restrictFromSize" name="restrict from size">
2 <description>Select the elements of a list of sequences or transcripts with a given size.</description> 2 <description>Select the elements of a list of sequences or transcripts with a given size.</description>
3 <requirements>
4 <requirement type="set_environment">PYTHONPATH</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 ../Java/Python/restrictFromSize.py -i $formatType.inputFileName 7 ../Java/Python/restrictFromSize.py -i $formatType.inputFileName
5 #if $formatType.FormatInputFileName == 'fasta': 8 #if $formatType.FormatInputFileName == 'fasta':
6 -f fasta 9 -f fasta
7 #elif $formatType.FormatInputFileName == 'bed': 10 #elif $formatType.FormatInputFileName == 'bed':
87 </conditional> 90 </conditional>
88 91
89 </inputs> 92 </inputs>
90 93
91 <outputs> 94 <outputs>
92 <data name="outputFileGff" format="gff3" label="[restrictFromSize] Output File"/> 95 <data name="outputFileGff" format="gff3" label="[restrict from size] output file"/>
93 </outputs> 96 </outputs>
94 97
95 <help> 98 <help>
96 Reads a list of sequences or genomic coordinates and outputs those which are longer and / or shorter than a given size ---which you provide. 99 Reads a list of sequences or genomic coordinates and outputs those which are longer and / or shorter than a given size ---which you provide.
97 </help> 100 </help>