Mercurial > repos > yufei-luo > s_mart
comparison commons/launcher/tests/Test_BlatClusterLauncher.py @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | |
| children |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
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| 1 import unittest | |
| 2 from commons.launcher.BlatClusterLauncher import BlatClusterLauncher | |
| 3 | |
| 4 | |
| 5 class Test_BlatClusterLauncher( unittest.TestCase ): | |
| 6 | |
| 7 def setUp( self ): | |
| 8 self._i = BlatClusterLauncher() | |
| 9 | |
| 10 | |
| 11 def tearDown( self ): | |
| 12 self._i = None | |
| 13 | |
| 14 | |
| 15 def test_getSpecificHelpAsString( self ): | |
| 16 exp = "" | |
| 17 exp += "\nspecific options:" | |
| 18 exp += "\n -s: name of the subject file (format='fasta')" | |
| 19 exp += "\n -p: parameters for 'blat'" | |
| 20 exp += "\n -Z: concatenate output files" | |
| 21 exp += "\n -A: same sequences (all-by-all)" | |
| 22 obs = self._i.getSpecificHelpAsString() | |
| 23 self.assertEqual( exp, obs ) | |
| 24 | |
| 25 | |
| 26 def test_setASpecificAttributeFromCmdLine( self ): | |
| 27 self._i.setASpecificAttributeFromCmdLine( "-s", "dummySubjectFile.fa" ) | |
| 28 self.assertEqual( "dummySubjectFile.fa", self._i.getSubjectFile() ) | |
| 29 | |
| 30 | |
| 31 test_suite = unittest.TestSuite() | |
| 32 test_suite.addTest( unittest.makeSuite( Test_BlatClusterLauncher ) ) | |
| 33 if __name__ == "__main__": | |
| 34 unittest.TextTestRunner(verbosity=2).run( test_suite ) |