Mercurial > repos > yufei-luo > s_mart

comparison commons/launcher/tests/Test_F_LaunchMap.py @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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17:b0e8584489e6 18:94ab73e8a190
1 import unittest
2 import os
3 import subprocess
4 from commons.core.utils.FileUtils import FileUtils
5 from commons.launcher.LaunchMap import LaunchMap
6
7 class Test_F_LaunchMap(unittest.TestCase):
8
9 def setUp(self):
10 self._fastaFileName = "LaunchMap_seqCluster1.fa"
11 fastaFilePath = "%s/Tools/%s" % (os.environ["REPET_DATA"], self._fastaFileName)
12 os.symlink(fastaFilePath, self._fastaFileName)
13 self._obsFileName = "%s.fa_aln" % self._fastaFileName
14
15 def tearDown(self):
16 os.remove(self._fastaFileName)
17 try:
18 os.remove(self._obsFileName)
19 except: pass
20
21 def test_run_as_script(self):
22 expFileName = "%s/Tools/expLaunchMap_seqCluster1.fa.fa_aln" % os.environ["REPET_DATA"]
23 obsFileName = "obs.fa_aln"
24 cmd = "LaunchMap.py "
25 cmd += "-i %s " % self._fastaFileName
26 cmd += "-o %s " % obsFileName
27 cmd += "-c "
28 process = subprocess.Popen(cmd, shell = True)
29 process.communicate()
30 self.assertTrue(FileUtils.are2FilesIdentical(expFileName, obsFileName))
31 os.remove(obsFileName)
32
33 def test_run(self):
34 expFileName = "%s/Tools/expLaunchMap_seqCluster1.fa.fa_aln" % os.environ["REPET_DATA"]
35 iLaunchMap = LaunchMap(self._fastaFileName)
36 iLaunchMap.setDoClean(True)
37 iLaunchMap.run()
38 self.assertTrue(FileUtils.are2FilesIdentical(expFileName, self._obsFileName))
39
40 if __name__ == "__main__":
41 unittest.main()