Mercurial > repos > yufei-luo > s_mart
comparison commons/pyRepetUnit/align/hmmOutputParsing/tests/Test_F_HmmpfamOutput2align.py @ 18:94ab73e8a190
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| author | m-zytnicki |
|---|---|
| date | Mon, 29 Apr 2013 03:20:15 -0400 |
| parents | |
| children |
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| 17:b0e8584489e6 | 18:94ab73e8a190 |
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| 1 import os | |
| 2 import unittest | |
| 3 from commons.pyRepetUnit.align.hmmOutputParsing.HmmpfamOutput2align import HmmpfamOutput2align | |
| 4 from commons.core.utils.FileUtils import FileUtils | |
| 5 | |
| 6 class Test_F_HmmpfamOutput2align(unittest.TestCase): | |
| 7 | |
| 8 def setUp(self): | |
| 9 self.hmmpfamOutput2align = HmmpfamOutput2align() | |
| 10 self._inputFile = "./datas/test_hmmpfam_output" | |
| 11 self._outputFile = "./datas/hmmpfam_output.align" | |
| 12 | |
| 13 def testParseHmmpfamOutput2align(self): | |
| 14 self.hmmpfamOutput2align.setInputFile(self._inputFile) | |
| 15 self.hmmpfamOutput2align.setOutputFile(self._outputFile) | |
| 16 self.hmmpfamOutput2align.run() | |
| 17 self.assertTrue(FileUtils.isRessourceExists(self._outputFile)) | |
| 18 self.assertTrue(FileUtils.are2FilesIdentical(self._inputFile + ".align", self._outputFile)) | |
| 19 os.remove( self._outputFile ) | |
| 20 | |
| 21 if __name__ == "__main__": | |
| 22 unittest.main() |