Mercurial > repos > yufei-luo > s_mart

comparison commons/tools/setnum2id.py @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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17:b0e8584489e6 18:94ab73e8a190
1 #!/usr/bin/env python
2
3 import os
4 import sys
5 import getopt
6 import exceptions
7
8 #-----------------------------------------------------------------------------
9
10 def help():
11
12 print "\nusage:",sys.argv[0]," [ options ]"
13 print "option:"
14 print " -h: this help"
15 print " -i: input set file"
16 print "output on stdout\n"
17
18 #-----------------------------------------------------------------------------
19
20 def main():
21
22 inFileName = ""
23
24 try:
25 opts, args = getopt.getopt(sys.argv[1:],"hi:")
26 except getopt.GetoptError:
27 help()
28 sys.exit(1)
29 for o,a in opts:
30 if o == "-h":
31 help()
32 sys.exit(0)
33 if o == "-i":
34 inFileName = a
35
36 if inFileName == "":
37 print "*** Error: missing input file name"
38 help()
39 sys.exit(1)
40
41 inFile = open( inFileName, "r" )
42 line = inFile.readline()
43
44 dID2count = {}
45 count = 1
46
47 while 1:
48
49 if line == "":
50 break
51
52 line = line.split()
53
54 path = line[0]
55 sbjName = line[1]
56 qryName = line[2]
57 qryStart = line[3]
58 qryEnd = line[4]
59
60 key_id = path + "-" + qryName + "-" + sbjName
61 if key_id not in dID2count.keys():
62 newPath = count
63 count += 1
64 dID2count[ key_id ] = newPath
65 else:
66 newPath = dID2count[ key_id ]
67
68 data = str(newPath) + "\t" + sbjName + "\t" + qryName + "\t"
69 data += qryStart + "\t" + qryEnd
70
71 print data
72 sys.stdout.flush()
73
74 line = inFile.readline()
75
76 inFile.close()
77
78 return 0
79
80 #-----------------------------------------------------------------------------
81
82 if __name__ == '__main__':
83 main()