Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/Clusterize.xml @ 56:97aa2e42bfdf
Uploaded
author | m-zytnicki |
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date | Wed, 05 Feb 2014 11:51:11 -0500 |
parents | 2c0c0a89fad7 |
children | 90f4b29d884f |
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55:2ac71607aa60 | 56:97aa2e42bfdf |
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13 -f gff2 | 13 -f gff2 |
14 #elif $formatType.FormatInputFileName == 'gff3': | 14 #elif $formatType.FormatInputFileName == 'gff3': |
15 -f gff3 | 15 -f gff3 |
16 #elif $formatType.FormatInputFileName == 'sam': | 16 #elif $formatType.FormatInputFileName == 'sam': |
17 -f sam | 17 -f sam |
18 #elif $formatType.FormatInputFileName == 'bam': | |
19 -f bam | |
18 #elif $formatType.FormatInputFileName == 'gtf': | 20 #elif $formatType.FormatInputFileName == 'gtf': |
19 -f gtf | 21 -f gtf |
20 #end if | 22 #end if |
21 -o $outputFileGff | 23 -o $outputFileGff |
22 $colinear | 24 $colinear |
30 <option value="bed">bed</option> | 32 <option value="bed">bed</option> |
31 <option value="gff">gff</option> | 33 <option value="gff">gff</option> |
32 <option value="gff2">gff2</option> | 34 <option value="gff2">gff2</option> |
33 <option value="gff3">gff3</option> | 35 <option value="gff3">gff3</option> |
34 <option value="sam">sam</option> | 36 <option value="sam">sam</option> |
37 <option value="bam">bam</option> | |
35 <option value="gtf">gtf</option> | 38 <option value="gtf">gtf</option> |
36 </param> | 39 </param> |
37 <when value="bed"> | 40 <when value="bed"> |
38 <param name="inputFileName" format="bed" type="data" label="Input File"/> | 41 <param name="inputFileName" format="bed" type="data" label="Input File"/> |
39 </when> | 42 </when> |
46 <when value="gff3"> | 49 <when value="gff3"> |
47 <param name="inputFileName" format="gff3" type="data" label="Input File"/> | 50 <param name="inputFileName" format="gff3" type="data" label="Input File"/> |
48 </when> | 51 </when> |
49 <when value="sam"> | 52 <when value="sam"> |
50 <param name="inputFileName" format="sam" type="data" label="Input File"/> | 53 <param name="inputFileName" format="sam" type="data" label="Input File"/> |
54 </when> | |
55 <when value="bam"> | |
56 <param name="inputFileName" format="bam" type="data" label="Input File"/> | |
51 </when> | 57 </when> |
52 <when value="gtf"> | 58 <when value="gtf"> |
53 <param name="inputFileName" format="gtf" type="data" label="Input File"/> | 59 <param name="inputFileName" format="gtf" type="data" label="Input File"/> |
54 </when> | 60 </when> |
55 </conditional> | 61 </conditional> |