Mercurial > repos > yufei-luo > s_mart

comparison smart_toolShed/SMART/Java/Files.java @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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-1:000000000000 0:e0f8dcca02ed
1 /**
2 *
3 * Copyright INRA-URGI 2009-2010
4 *
5 * This software is governed by the CeCILL license under French law and
6 * abiding by the rules of distribution of free software. You can use,
7 * modify and/ or redistribute the software under the terms of the CeCILL
8 * license as circulated by CEA, CNRS and INRIA at the following URL
9 * "http://www.cecill.info".
10 *
11 * As a counterpart to the access to the source code and rights to copy,
12 * modify and redistribute granted by the license, users are provided only
13 * with a limited warranty and the software's author, the holder of the
14 * economic rights, and the successive licensors have only limited
15 * liability.
16 *
17 * In this respect, the user's attention is drawn to the risks associated
18 * with loading, using, modifying and/or developing or reproducing the
19 * software by the user in light of its specific status of free software,
20 * that may mean that it is complicated to manipulate, and that also
21 * therefore means that it is reserved for developers and experienced
22 * professionals having in-depth computer knowledge. Users are therefore
23 * encouraged to load and test the software's suitability as regards their
24 * requirements in conditions enabling the security of their systems and/or
25 * data to be ensured and, more generally, to use and operate it in the
26 * same conditions as regards security.
27 *
28 * The fact that you are presently reading this means that you have had
29 * knowledge of the CeCILL license and that you accept its terms.
30 *
31 */
32 import java.util.*;
33
34 public class Files {
35 HashMap <String, File> files;
36
37 public Files () {
38 files = new HashMap < String, File> ();
39 }
40
41 public void addFile(String fileName, String type, String format) {
42 this.addFile(new File(fileName, type, format));
43 }
44
45 public void addFile(File file) {
46 files.put(file.name, file);
47 }
48
49 public void clear() {
50 files.clear();
51 }
52
53 public String getType(String fileName) {
54 if (fileName == null) {
55 System.out.println("Error! Looking for format of empty file name!");
56 }
57 if (! files.containsKey(fileName)) {
58 System.out.println("Oops! Format type of file " + fileName + " is not found!");
59 return null;
60 }
61 return files.get(fileName).formatType;
62 }
63
64 public String getFormat(String fileName) {
65 if (fileName == null) {
66 System.out.println("Error! Looking for format of empty file name!");
67 }
68 if (! files.containsKey(fileName)) {
69 System.out.println("Oops! Format of file " + fileName + " is not found!");
70 return null;
71 }
72 return files.get(fileName).format;
73 }
74 }
75