Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/ConvertTranscriptFile_SamToGff3.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| children |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="ConvertTranscriptFile_SamToGff3" name="Sam -> Gff3"> | |
| 2 <description>Convert Sam File to Gff3 File.</description> | |
| 3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g gff3 yes 2>$logFile </command> | |
| 4 <inputs> | |
| 5 <param name="inputFile" type="data" label="Input File" format="sam"/> | |
| 6 </inputs> | |
| 7 | |
| 8 <outputs> | |
| 9 <data format="gff3" name="outputFile" label="[sam -> gff3] Output File"/> | |
| 10 <data format="txt" name="logFile" label="[sam -> gff3] Log File"/> | |
| 11 </outputs> | |
| 12 | |
| 13 <help> | |
| 14 </help> | |
| 15 </tool> |