Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/DiffExpAnal.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="testDiffExpAnal" name="Differential Expression Analysis"> | |
| 2 <description>Differential expression analysis for sequence count data</description> | |
| 3 <command interpreter="sh"> ../DiffExpAnal/testR.sh $inputFile $columnsOfGeneName $columnsOfCondition1 $columnsOfCondition2 $outputFileCSV $outputFilePNG 2>$outputLog </command> | |
| 4 <inputs> | |
| 5 <param name="inputFile" type="data" label="Input File" format="tabular"/> | |
| 6 <param name="columnsOfGeneName" type="text" value="0" label="Please indicate the column numbers of gene names with ',' separator. If There are not gene names, default value is 0."/> | |
| 7 <param name="columnsOfCondition1" type="text" value="1,2" label="Please indicate the column numbers of condition1 with ',' separator."/> | |
| 8 <param name="columnsOfCondition2" type="text" value="3,4" label="Please indicate the column numbers of condition2 with ',' separator."/> | |
| 9 </inputs> | |
| 10 | |
| 11 <outputs> | |
| 12 <data format="tabular" name="outputFileCSV" label="[DiffExpAnal] Output CSV File"/> | |
| 13 <data format="png" name="outputFilePNG" label="[DiffExpAnal] Output PNG File"/> | |
| 14 <data format="tabular" name="outputLog" label="[DiffExpAnal] Log File"/> | |
| 15 </outputs> | |
| 16 | |
| 17 <help> | |
| 18 </help> | |
| 19 </tool> |