Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/changeGffFeatures.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="changeGffFeatures" name="change gff Features"> | |
| 2 <description>Changes one feature name by an other name (the feature name can be found on the 3rd column).</description> | |
| 3 <command interpreter="bash"> | |
| 4 ../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
| 8 <param name="inputFeature" type="text" value="exon" label="A given feature, you must choose a feature name(on the 3rd column)."/> | |
| 9 <param name="outputFeature" type="text" value="exon" label="You must choose an other feature name(on the 3rd column)."/> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/> | |
| 14 </outputs> | |
| 15 </tool> | |
| 16 |