Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/cleanGff.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="cleanGff" name="clean Gff"> | |
| 2 <description>Cleans a GFF file as given by NCBI and outpus a Gff3 file.</description> | |
| 3 <command interpreter="python"> ../Java/Python/cleanGff.py -i $inputFile | |
| 4 -t $type | |
| 5 -o $outputFile | |
| 6 </command> | |
| 7 | |
| 8 <inputs> | |
| 9 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
| 10 <param name="type" type="text" value="tRNA,rRNA,ncRNA,CDS" label="tag option, compulsory option" help="lists of comma separated types that you want to keep.EX: ncRNA,tRNA,rRNA,CDS"/> | |
| 11 </inputs> | |
| 12 | |
| 13 <outputs> | |
| 14 <data format="gff3" name="outputFile" label="[cleanGff] Output File"/> | |
| 15 </outputs> | |
| 16 | |
| 17 </tool> | |
| 18 |