Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/getSequence.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="getSequence" name="get sequence"> | |
| 2 <description>Get a single sequence in a FASTA file.</description> | |
| 3 <command interpreter="python"> ../Java/Python/getSequence.py -i $inputFile | |
| 4 -n $name | |
| 5 -o $outputFile | |
| 6 | |
| 7 </command> | |
| 8 | |
| 9 | |
| 10 <inputs> | |
| 11 <param name="inputFile" type="data" label="Input fasta File" format="fasta"/> | |
| 12 <param name="name" type="text" value="None" label="name of the sequence [compulsory option]"/> | |
| 13 </inputs> | |
| 14 | |
| 15 <outputs> | |
| 16 <data format="fasta" name="outputFile" label="[getSequence] Output File"/> | |
| 17 </outputs> | |
| 18 | |
| 19 <help> | |
| 20 </help> | |
| 21 </tool> |