Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/getWigDistance.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="getWigDistance" name="get wig distance"> | |
| 2 <description>Compute the average data around some genomic coordinates using WIG files (thus covering a large proportion of the genome).</description> | |
| 3 <command interpreter="python"> | |
| 4 ../Java/Python/getWigDistance.py -i $inputGff3File -f gff3 -w $inputWigFile -a 0.0 -d $distance $strand -o $outputFile | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="inputGff3File" type="data" label="Input Gff3 File (compulsory option)" format="gff3"/> | |
| 9 <param name="inputWigFile" type="data" label="Input Wig File (compulsory option)" format="wig"/> | |
| 10 <param name="distance" type="integer" value="1000" label="distance option (compulsory option)" help="Distance around position.Be Careful! The value must be upper than 0"/> | |
| 11 <param name="strand" type="boolean" truevalue="-s" falsevalue="" checked="false" label="consider both strands separately."/> | |
| 12 </inputs> | |
| 13 | |
| 14 <outputs> | |
| 15 <data name="outputFile" format="png" label="[getWigDistance] PNG output File"/> | |
| 16 </outputs> | |
| 17 </tool> |