Mercurial > repos > yufei-luo > s_mart
comparison smart_toolShed/SMART/galaxy/modifySequenceList.xml @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
| author | yufei-luo |
|---|---|
| date | Thu, 17 Jan 2013 10:52:14 -0500 |
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| children |
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| -1:000000000000 | 0:e0f8dcca02ed |
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| 1 <tool id="modifySequenceList" name="modify sequence list"> | |
| 2 <description>Extend or shring a list of sequences. </description> | |
| 3 <command interpreter="python"> ../Java/Python/modifySequenceList.py -i $inputFile -f fasta | |
| 4 #if $OptionStart.Start == "Yes": | |
| 5 -s $OptionStart.StartVal | |
| 6 #end if | |
| 7 #if $OptionEnd.End == "Yes": | |
| 8 -e $OptionEnd.EndVal | |
| 9 #end if | |
| 10 -o $outputFile | |
| 11 </command> | |
| 12 | |
| 13 | |
| 14 <inputs> | |
| 15 <param name="inputFile" type="data" format="fasta" label="input file"/> | |
| 16 | |
| 17 <conditional name="OptionStart"> | |
| 18 <param name="Start" type="select" label="keep first nucleotides"> | |
| 19 <option value="Yes">Yes</option> | |
| 20 <option value="No" selected="true">No</option> | |
| 21 </param> | |
| 22 <when value="Yes"> | |
| 23 <param name="StartVal" type="integer" value="0" /> | |
| 24 </when> | |
| 25 <when value="No"> | |
| 26 </when> | |
| 27 </conditional> | |
| 28 | |
| 29 <conditional name="OptionEnd"> | |
| 30 <param name="End" type="select" label="keep last nucleotides"> | |
| 31 <option value="Yes">Yes</option> | |
| 32 <option value="No" selected="true">No</option> | |
| 33 </param> | |
| 34 <when value="Yes"> | |
| 35 <param name="EndVal" type="integer" value="0"/> | |
| 36 </when> | |
| 37 <when value="No"> | |
| 38 </when> | |
| 39 </conditional> | |
| 40 </inputs> | |
| 41 | |
| 42 <outputs> | |
| 43 <data format="fasta" name="outputFile" label="[modifySequenceList] Output File"/> | |
| 44 </outputs> | |
| 45 | |
| 46 </tool> |