--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/DiffExpAnal/DESeqTools/boxplotCounts.R	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,18 @@
+# boxplotCounts
+# boxplots representing counts distribution per sample
+
+# input : counts, target, projectName, type of data (raw or norm)
+# output : boxplot (png)
+
+# created Feb 7th, 2012
+# modified April 30th, 2012
+
+boxplotCounts <- function( counts, group, type = c("raw", "norm"), OUT_boxplotCountsName, out = TRUE ){
+
+  if (out) png( file=OUT_boxplotCountsName )
+
+  boxplot( log2(counts+1), col=as.integer(group)+1, main = paste(type[1], " counts distribution", sep="" ) )
+  legend( "topright", as.character(unique(group)), lty=1, col=as.integer(unique(group))+1 )
+
+  if (out) dev.off()
+}