Mercurial > repos > yufei-luo > s_mart
diff SMART/DiffExpAnal/loadMultiFastqFiles.sh @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMART/DiffExpAnal/loadMultiFastqFiles.sh Tue Apr 30 14:33:21 2013 -0400 @@ -0,0 +1,24 @@ +#!/bin/bash + +OUTFile=${1} +shift +groupCount=1 +replicateNumber=1 + +arrayZ=( $@ ) +#remove the last symble '@' given by commande line +unset arrayZ[${#arrayZ[@]}-1] + +for FILE in ${arrayZ[@]} +do + #if a new group of fastq, re-count the replicateNumber + if echo $FILE | grep -q "@" + then + groupCount=$(($groupCount + 1)) + replicateNumber=1 + else + echo -e "Group${groupCount}_${replicateNumber}\t${FILE}" >>${OUTFile} + replicateNumber=$(($replicateNumber + 1)) + fi +done +