diff SMART/galaxy/changeGffFeatures.xml @ 31:0ab839023fe4

Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
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--- a/SMART/galaxy/changeGffFeatures.xml	Mon Apr 29 03:45:52 2013 -0400
+++ b/SMART/galaxy/changeGffFeatures.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -1,23 +1,16 @@
-<tool id="changeGffFeatures" name="change GFF features">
-	<description>Change a feature in a GFF file (the feature is the 3rd column).</description>
-		<requirements>
-			<requirement type="set_environment">PYTHONPATH</requirement>
-		</requirements>
+<tool id="changeGffFeatures" name="change gff Features">
+	<description>Changes one feature name by an other name (the feature name can be found on the 3rd column).</description>
 		<command interpreter="bash">
 			../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile
 		</command>
       <inputs>
 	      <param name="inputFile" type="data" label="Input File" format="gff"/>	
-	      <param name="inputFeature" type="text" value="exon" label="The feature you want to change"/>
-	      <param name="outputFeature" type="text" value="exon" label="The new feature"/>
+	      <param name="inputFeature" type="text" value="exon" label="A given feature, you must choose a feature name(on the 3rd column)."/>
+	      <param name="outputFeature" type="text" value="exon" label="You must choose an other feature name(on the 3rd column)."/>
       </inputs>
 
       <outputs>
-             <data name="outputFile" format="gff" label="[change GFF features] Output File"/>
+             <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/>
       </outputs> 
-
-	  <help>
-		This script changes the third column of a GFF3 file (please refer to http://www.sequenceontology.org/gff3.shtml to know more about this format).
-	  </help>
 </tool>