Mercurial > repos > yufei-luo > s_mart
diff SMART/galaxy/changeGffFeatures.xml @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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--- a/SMART/galaxy/changeGffFeatures.xml Mon Apr 29 03:45:52 2013 -0400 +++ b/SMART/galaxy/changeGffFeatures.xml Tue Apr 30 14:33:21 2013 -0400 @@ -1,23 +1,16 @@ -<tool id="changeGffFeatures" name="change GFF features"> - <description>Change a feature in a GFF file (the feature is the 3rd column).</description> - <requirements> - <requirement type="set_environment">PYTHONPATH</requirement> - </requirements> +<tool id="changeGffFeatures" name="change gff Features"> + <description>Changes one feature name by an other name (the feature name can be found on the 3rd column).</description> <command interpreter="bash"> ../Java/Python/changeGffFeatures.sh $inputFile $inputFeature $outputFeature >$outputFile </command> <inputs> <param name="inputFile" type="data" label="Input File" format="gff"/> - <param name="inputFeature" type="text" value="exon" label="The feature you want to change"/> - <param name="outputFeature" type="text" value="exon" label="The new feature"/> + <param name="inputFeature" type="text" value="exon" label="A given feature, you must choose a feature name(on the 3rd column)."/> + <param name="outputFeature" type="text" value="exon" label="You must choose an other feature name(on the 3rd column)."/> </inputs> <outputs> - <data name="outputFile" format="gff" label="[change GFF features] Output File"/> + <data name="outputFile" format="gff" label="[changeGffFeatures] Output File"/> </outputs> - - <help> - This script changes the third column of a GFF3 file (please refer to http://www.sequenceontology.org/gff3.shtml to know more about this format). - </help> </tool>