Mercurial > repos > yufei-luo > s_mart

diff SMART/galaxy/cleanGff.xml @ 31:0ab839023fe4

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Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 769e306b7933
children 440ceca58672
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SMART/galaxy/cleanGff.xml	Tue Apr 30 14:33:21 2013 -0400
@@ -0,0 +1,18 @@
+<tool id="cleanGff" name="clean Gff">
+	  <description>Cleans a GFF file as given by NCBI and outpus a Gff3 file.</description>
+	  <command interpreter="python"> ../Java/Python/cleanGff.py -i $inputFile 
+		  -t $type 
+		  -o $outputFile
+	  </command>
+
+	      <inputs>
+		      <param name="inputFile" type="data" label="Input File" format="gff"/>
+		      <param name="type" type="text" value="tRNA,rRNA,ncRNA,CDS" label="tag option, compulsory option" help="lists of comma separated types that you want to keep.EX: ncRNA,tRNA,rRNA,CDS"/>
+	      </inputs>
+
+	      <outputs>
+	          <data format="gff3" name="outputFile" label="[cleanGff] Output File"/>
+	      </outputs>
+
+</tool>
+